Basic Information
Locus ID:
nbisL1-mrna-9793
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 17100345 | 17104641 | + | nbisL1-mrna-9793 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 48,301.67 Da | 68.16 | 81.35 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 12 | 165 | 2.09954E-54 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 237 | 280 | 1.03921E-22 | - |
| Pfam | PF13639 | Ring finger domain | 237 | 280 | 8.5E-12 | IPR001841 |
| Pfam | PF02225 | PA domain | 61 | 146 | 9.2E-10 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 83 | 147 | 1.7E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 221 | 293 | 2.06E-19 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 22 | 158 | 3.5E-28 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 197 | 285 | 6.8E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 238 | 279 | 3.4E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 238 | 280 | 12.194218 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_025015662.2 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Ricinus communis] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2KRX0 | Receptor homology region transmembrane domain-and RING domain-containing protein 2-like isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology