Basic Information
Locus ID:
nbisL1-mrna-9763
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Serine threonine-protein kinase-like protein CCR4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 16827735 | 16830403 | + | nbisL1-mrna-9763 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 82,454.02 Da | 47.31 | 87.09 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 450 | 734 | 3.93418E-93 | - |
| Pfam | PF00069 | Protein kinase domain | 445 | 730 | 1.2E-44 | IPR000719 |
| Pfam | PF13540 | Regulator of chromosome condensation (RCC1) repeat | 207 | 228 | 4.6E-6 | - |
| SUPERFAMILY | SSF50985 | RCC1/BLIP-II | 106 | 303 | 7.15E-23 | IPR009091 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 423 | 732 | 2.16E-76 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 416 | 534 | 3.2E-33 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 535 | 745 | 4.0E-54 | - |
| Gene3D | G3DSA:2.130.10.30 | - | 204 | 328 | 4.1E-19 | IPR009091 |
| Gene3D | G3DSA:2.130.10.30 | - | 40 | 203 | 1.5E-7 | IPR009091 |
| SMART | SM00220 | serkin_6 | 444 | 736 | 2.6E-29 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 444 | 745 | 38.392902 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 450 | 472 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 580 | 592 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47850.1 | CRINKLY4 related 4. | 0 |
| RefSeq | XP_021673876.1 | - | 0 |
| Q9FIJ6 | Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana OX=3702 GN=CCR4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2QL76 | Serine/threonine-protein kinase-like protein CCR4 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology