Basic Information
Locus ID:
nbisL1-mrna-9753
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000011F_pilon | 2731791 | 2733895 | + | nbisL1-mrna-9753 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.03 | 67,227.73 Da | 35.25 | 99.25 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 189 | 443 | 1.3E-88 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 60 | 125 | 4.55E-7 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 189 | 467 | 87.43367 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 602 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 602 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_011030353.1 | PREDICTED: BTB/POZ domain-containing protein NPY2-like [Populus euphratica] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2KIS1 | NPH3 domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS283891 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology