Basic Information
Locus ID:
nbisL1-mrna-9728
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
tRNA 2'-phosphotransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000355F_pilon | 63444 | 67649 | + | nbisL1-mrna-9728 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.72 | 33,771.48 Da | 50.57 | 87.82 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01885 | RNA 2'-phosphotransferase, Tpt1 / KptA family | 94 | 275 | 1.8E-62 | IPR002745 |
| SUPERFAMILY | SSF56399 | ADP-ribosylation | 97 | 277 | 3.93E-46 | - |
| Gene3D | G3DSA:1.10.10.970 | - | 93 | 173 | 1.4E-17 | IPR042080 |
| Gene3D | G3DSA:3.20.170.30 | - | 199 | 294 | 3.4E-28 | IPR042081 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 91 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45330.2 | RNA 2'-phosphotransferase, Tpt1 / KptA family. | 0 |
| RefSeq | XP_040954256.1 | tRNA 2'-phosphotransferase 1 isoform X1 [Gossypium hirsutum] | 0 |
| Q5EAR5 | tRNA 2'-phosphotransferase 1 OS=Danio rerio OX=7955 GN=trpt1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2K225 | 2'-phosphotransferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29682 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1347 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023194 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4304, Sbi_jg49517 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5728 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000282 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11287, Sgl16680 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016325, gene:ENSEOMG00000026899 ... |
| Amaranthaceae | Chenopodium quinoa | 8 | CQ.Regalona.r1.1AG0006390, CQ.Regalona.r1.1AG0017630 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30000920, pistato.v30002830 |
| Apiaceae | Apium graveolens | 4 | Ag6G00120, AgUnG00663, AgUnG01263, AgUnG01270 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723773 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1310.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G15639, Ftri15G26951 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G45330.1, AT5G23600.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001570m.g.v1.0, Thhalv10019720m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g05260.v2.2, Sp4g27360.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g001570.2N, BniB03g051030.2N, BniB06g003700.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0512 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0534 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g04980 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0149s00019.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g09350 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.171 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00018706, Pov_00018709, Pov_00028846, Pov_00032708 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22208 |
| Poaceae | Echinochloa crus-galli | 5 | AH03.1674, AH06.121, BH02.2206, BH06.223, CH06.206 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0507600, gene-QOZ80_6BG0459680 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0645480.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_027681 |
| Poaceae | Oryza coarctata | 1 | Oco11G001700 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g04300.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G285900, gene-BS78_10G025900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0401985 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr14G001270, Chr21G000360 |
| Poaceae | Thinopyrum elongatum | 4 | Tel6E01G543100, Tel7E01G149900, Tel7E01G150300 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG068410, gene_TRIDC2BG012070 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G485300.1, TraesCS3D02G058800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb244410_P002, Zm00001eb377990_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-53839 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31300 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.782, evm.TU.LG24.782 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc07g07060, gene.Posoc07g07070, gene.Posoc09g01590 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.168 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000028l.100 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010566 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9728 |
| Salicaceae | Populus euphratica | 2 | populus_peu16452, populus_peu32072 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132645714, gene-LOC132645717 |
| Solanaceae | Solanum chilense | 1 | SOLCI003070700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008178 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.9976_chr06_+, gene_14186 |
| Tamaricaceae | Tamarix chinensis | 4 | TC01G1851, TC09G0050, TC09G2084, TC11G2317 |
| Zosteraceae | Zostera marina | 1 | Zosma06g05210.v3.1 |