Basic Information
Locus ID:
nbisL1-mrna-9719
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the peptidase A1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000355F_pilon | 8365 | 13209 | + | nbisL1-mrna-9719 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 46,382.85 Da | 33.15 | 88.53 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00026 | Eukaryotic aspartyl protease | 67 | 426 | 6.2E-75 | IPR033121 |
| Pfam | PF05184 | Saposin-like type B, region 1 | 300 | 336 | 1.7E-13 | IPR007856 |
| SUPERFAMILY | SSF50630 | Acid proteases | 31 | 426 | 8.61E-73 | IPR021109 |
| SUPERFAMILY | SSF47862 | Saposin | 228 | 336 | 7.85E-15 | IPR011001 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 177 | 427 | 2.4E-100 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 4 | 68 | 6.3E-12 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 69 | 158 | 1.7E-27 | IPR021109 |
| Gene3D | G3DSA:1.10.225.10 | - | 227 | 336 | 2.4E-100 | - |
| ProSiteProfiles | PS51767 | Peptidase family A1 domain profile. | 1 | 424 | 28.12369 | IPR033121 |
| ProSiteProfiles | PS50015 | Saposin B type domain profile. | 297 | 338 | 12.590799 | IPR008139 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 199 | 210 | - | IPR001969 |
| PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 400 | 415 | 1.6E-14 | IPR001461 |
| PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 199 | 210 | 1.6E-14 | IPR001461 |
| PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 53 | 73 | 1.6E-14 | IPR001461 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11910.1 | aspartic proteinase A1. Encodes an aspartic proteinase that forms a heterodimer and is stable over a broad pH range (ph 3-8). | 0 |
| RefSeq | XP_023901186.1 | - | 0 |
| O04057 | Aspartic proteinase OS=Cucurbita pepo OX=3663 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2JHI6 | Uncharacterized protein MANES_15G068900 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg38318 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25822 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000010767 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G004750 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3149.V1.1 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5128 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_049989 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G098300 |
| Poaceae | Triticum aestivum | 1 | TraesCS3B02G269300.1 |
| Poaceae | Zea mays | 19 | Zm00001eb046200_P001, Zm00001eb056740_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-56591 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g09600 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22268 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9719 |
| Zosteraceae | Zostera marina | 1 | Zosma04g06120.v3.1 |