Basic Information
Locus ID:
nbisL1-mrna-9712
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000193F_pilon | 4260221 | 4269820 | - | nbisL1-mrna-9712 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 99,561.80 Da | 47.04 | 69.51 | -0.87 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48371 | ARM repeat | 39 | 268 | 1.51E-7 | IPR016024 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 451 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 404 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 604 | 647 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 819 | 866 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 545 | 566 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 583 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 544 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 797 | 818 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 749 | 782 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 664 | 912 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 867 | 912 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 390 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 729 | 747 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 665 | 690 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 711 | 728 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 610 | 645 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31880.1 | 0 | |
| RefSeq | XP_043807719.1 | titin homolog isoform X2 [Manihot esculenta] | 0 |
| Q8GUP3 | Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LRH0 | Tudor domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology