Basic Information
Locus ID:
nbisL1-mrna-971
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 7903302 | 7912125 | - | nbisL1-mrna-971 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 147,993.11 Da | 51.00 | 74.65 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1193 | 1300 | 2.33388E-51 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 591 | 925 | 8.0725E-85 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 1040 | 1077 | 1.3E-7 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 603 | 1002 | 6.7E-69 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1188 | 1290 | 2.1E-15 | IPR001650 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1034 | 1101 | 1.18E-12 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 934 | 1347 | 1.06E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 578 | 925 | 9.88E-44 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 567 | 652 | 7.5E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 783 | 938 | 6.0E-29 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 654 | 782 | 2.4E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 940 | 1348 | 2.2E-62 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1029 | 1121 | 2.9E-13 | IPR013083 |
| SMART | SM00487 | ultradead3 | 587 | 904 | 1.2E-29 | IPR014001 |
| SMART | SM00490 | helicmild6 | 1207 | 1290 | 2.8E-17 | IPR001650 |
| SMART | SM00184 | ring_2 | 1040 | 1078 | 1.0E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1040 | 1079 | 10.733671 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1184 | 1343 | 14.721501 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 606 | 887 | 11.50878 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1055 | 1064 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 771 | 794 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 678 | 700 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 768 | 808 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1149 | 1173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 673 | 705 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_039049742.1 | helicase-like transcription factor CHR28 isoform X1 [Hibiscus syriacus] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2WWL2 | Helicase-like transcription factor CHR28 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116962pilonHSYRG00946 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology