Basic Information
Locus ID:
nbisL1-mrna-9682
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
P21-activated protein kinase-interacting protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 5186655 | 5190026 | - | nbisL1-mrna-9682 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.60 | 27,422.38 Da | 44.58 | 95.20 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 109 | 199 | 1.67E-11 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 92 | 215 | 2.4E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 134 | 182 | 0.54 | IPR001680 |
| SMART | SM00320 | WD40_4 | 95 | 131 | 5.3 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 117 | 140 | 8.703868 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65030.1 | Transducin/WD40 repeat-like superfamily protein. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_050235235.1 | uncharacterized protein LOC126683401 [Mercurialis annua] | 0 |
| Q9LZ19 | Pentatricopeptide repeat-containing protein At5g04780, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6A6M0M9 | WD_REPEATS_REGION domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_005629 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G0285, Cgl07G1502 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-8660, nbisL1-mrna-8661, nbisL1-mrna-9681 ... |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9143 |