Basic Information
Locus ID:
nbisL1-mrna-9681
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 5249380 | 5252714 | - | nbisL1-mrna-9681 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 39,495.12 Da | 42.31 | 88.31 | -0.30 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65030.1 | Transducin/WD40 repeat-like superfamily protein. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_021598696.2 | pentatricopeptide repeat-containing protein At3g12770 [Manihot esculenta] | 0 |
| Q9SY02 | Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1 | 0 | |
| TrEMBL | A0A7N2LPN2 | Pentatricopeptide repeat-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G0285, Cgl07G1502 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-8660, nbisL1-mrna-8661, nbisL1-mrna-9681 ... |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9143 |