Basic Information
Locus ID:
nbisL1-mrna-9673
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000193F_pilon | 3596386 | 3600670 | + | nbisL1-mrna-9673 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 33,255.37 Da | 45.32 | 70.00 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 154 | 200 | 1.4E-9 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 149 | 204 | 2.19E-14 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 88 | 206 | 5.2E-16 | IPR013083 |
| SMART | SM00249 | PHD_3 | 153 | 199 | 3.9E-10 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 151 | 201 | 9.507799 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 154 | 198 | - | IPR019786 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19260.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_034682818.1 | uncharacterized protein LOC117912369 [Vitis riparia] | 0 |
| Q9FNE9 | Histone-lysine N-methyltransferase ATXR6 OS=Arabidopsis thaliana OX=3702 GN=ATXR6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JXH6 | Uncharacterized protein LOC105113992 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg31836, jg32782 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11106 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015499 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg25239 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19510 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011265 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl43209, Sgl48037 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012276, gene:ENSEOMG00000033567 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0013830, CQ.Regalona.r1.8BG0015060 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30252170, pistato.v30262770 |
| Apiaceae | Apium graveolens | 3 | Ag10G02723, Ag2G02656, Ag3G02342 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G019340, COCNU_11G009790 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103707060, gene-LOC103713145 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.2384.V1.1, AsparagusV1_05.3532.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G27114 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G19260.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022602m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g32620.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g068450.2N, BniB04g025100.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2007 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2194 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g08520, gene.Cymno06g06110 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.3946s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g02250 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3719 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.528 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003543, Pov_00036912 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G22640, Lb4G23149, Lb4G24157 |
| Poaceae | Echinochloa crus-galli | 6 | AH04.2172, AH06.2555, BH04.2324, BH06.2357, CH04.2589 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.4HG0360400.3, HORVU.MOREX.r3.4HG0360500.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_036420, gene-QYE76_066159, gene-QYE76_066367 |
| Poaceae | Oryza coarctata | 2 | Oco07G005790, Oco08G005800 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g34720.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G134400, gene-BS78_10G216600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0401390, Pt_Chr0704724 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G019870, Chr02G031420, Chr05G009200, Chr12G018170 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G278000, Tel7E01G832900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG026600, gene_TRIDC4BG024350 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G166600.1, TraesCS4B02G145500.6 ... |
| Poaceae | Zea mays | 3 | Zm00001eb002000_P001, Zm00001eb274650_P002 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-23994, nbis-gene-48709, nbis-gene-9832 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g28307, Zma_g30946 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1557, evm.TU.LG22.451 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g20530, gene.Posoc03g15440 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_4_RagTag.1492, evm.TU.Scaffold_4_RagTag.2040 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-13499, nbisL1-mrna-25466, nbisL1-mrna-25467 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-1987, nbisL1-mrna-7827, nbisL1-mrna-7828 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-4325, nbisL1-mrna-4326, nbisL1-mrna-4806 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.1187, evm.TU.utg000008l.810 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000735, Maker00001274 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14258, nbisL1-mrna-2244 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9673 |
| Salicaceae | Populus euphratica | 4 | populus_peu05832, populus_peu05833, populus_peu11200 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621684 |
| Solanaceae | Solanum chilense | 1 | SOLCI000502500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008793 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8212 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0723 |
| Zosteraceae | Zostera marina | 4 | Zosma02g15600.v3.1, Zosma03g07030.v3.1, Zosma03g19580.v3.1 ... |