Basic Information
Locus ID:
nbisL1-mrna-9673
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 16069293 | 16072221 | + | nbisL1-mrna-9673 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.73 | 39,349.32 Da | 48.31 | 97.54 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 220 | 243 | 0.23 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 141 | 159 | 0.53 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 194 | 217 | 0.0027 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 61 | 269 | 9.81E-40 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 27 | 78 | 8.76E-7 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 33 | 291 | 7.6E-52 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 62 | 87 | 28.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 115 | 140 | 2.3E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 194 | 219 | 4.4E-7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 246 | 271 | 1.8E-6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 289 | 314 | 0.35 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 88 | 114 | 50.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 141 | 166 | 3.6E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 167 | 193 | 0.13 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 220 | 245 | 1.8E-6 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21410.1 | F-box/RNI-like superfamily protein. AtSKP2;1 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes. | 0 |
| RefSeq | XP_012066111.1 | F-box protein SKP2A [Jatropha curcas] | 0 |
| Q9LPL4 | F-box protein SKP2A OS=Arabidopsis thaliana OX=3702 GN=SKP2A PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K4I9 | F-box protein SKP2A OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg12027, jg23112, jg6424 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1046 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah024228 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg28290, Sbi_jg51351 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7169 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020150 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl11686, Sgl17186, Sgl17199 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015019, gene:ENSEOMG00000036202 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0013550, CQ.Regalona.r1.1BG0012620 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30038670 |
| Apiaceae | Apium graveolens | 1 | Ag3G01104 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G020690, scaffold004999G000030 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103718718, gene-LOC103722202, gene-LOC120113029 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.2212.V1.1, AsparagusV1_04.2920.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G04449, Ftri18G05855, Ftri9G13404 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G21410.1, AT1G77000.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008012m.g.v1.0, Thhalv10018746m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g18960.v2.2, Sp5g32170.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g033930.2N, BniB03g009180.2N, BniB03g056160.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1903 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2051 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno04g00950, gene.Cymno07g02640, gene.Cymno08g07040 |
| Hydrocharitaceae | Thalassia testudinum | 5 | gene.Thate05g12870, gene.Thate05g18220, gene.Thate05g20980 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1696 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.790 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00023061, Pov_00037879 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34385 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.4089, AH05.2387, BH02.4101, BH05.2490, CH02.4133 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0042140, gene-QOZ80_1BG0091960 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0066590.1, HORVU.MOREX.r3.3HG0307360.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_013185, gene-QYE76_056798, gene-QYE76_056949 ... |
| Poaceae | Oryza coarctata | 4 | Oco01G026590, Oco02G027640, Oco09G010090, Oco10G010200 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g65920.1, LOC_Os05g35110.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G358200, gene-BS78_09G150500 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0505001, Pt_Chr0505042, Pt_Chr0600069, Pt_Chr0600090 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G020100, Chr02G002980, Chr03G021400, Chr08G020770 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G436100, Tel3E01G648500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG039550, gene_TRIDC1BG045020 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G264900.1, TraesCS1B02G275600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb145730_P001, Zm00001eb288390_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-11182, nbis-gene-23926, nbis-gene-28553 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g11670, Zma_g28272, Zma_g9135 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1523, evm.TU.LG10.1433 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g02370, gene.Posoc05g12240, gene.Posoc05g18460 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1172, evm.TU.Scaffold_8_RagTag.580 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18668, nbisL1-mrna-9673 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1118, nbisL1-mrna-2505 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13157, nbisL1-mrna-18147 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.389, evm.TU.utg000018l.626 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003090, Maker00012000 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8911 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18384, nbisL1-mrna-18596 |
| Salicaceae | Populus euphratica | 3 | populus_peu14817, populus_peu14822, populus_peu32493 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627211 |
| Solanaceae | Solanum chilense | 1 | SOLCI000520000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015571 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.25484_chr11_+, gene_15109 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G3082, TC09G1978 |
| Zosteraceae | Zostera marina | 5 | Zosma01g42030.v3.1, Zosma01g42050.v3.1, Zosma04g14710.v3.1 ... |