Basic Information
Locus ID:
nbisL1-mrna-9654
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000193F_pilon | 3341792 | 3348163 | + | nbisL1-mrna-9654 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 146,703.80 Da | 48.30 | 75.82 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 1027 | 1305 | 1.18267E-105 | - |
| CDD | cd06410 | PB1_UP2 | 182 | 277 | 1.87794E-43 | - |
| Pfam | PF00564 | PB1 domain | 195 | 278 | 5.6E-20 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1091 | 1305 | 5.1E-52 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1013 | 1304 | 1.52E-73 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 195 | 284 | 2.8E-22 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1007 | 1074 | 3.0E-11 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1077 | 1135 | 2.2E-9 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 197 | 279 | 6.1E-12 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1136 | 1326 | 1.2E-51 | - |
| SMART | SM00666 | PB1_new | 193 | 279 | 9.3E-32 | IPR000270 |
| SMART | SM00220 | serkin_6 | 1021 | 1308 | 6.9E-58 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1021 | 1307 | 39.735634 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1171 | 1183 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1027 | 1052 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1165 | 1183 | 4.5E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1128 | 1141 | 4.5E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1276 | 1298 | 4.5E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1232 | 1254 | 4.5E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 435 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35050.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_011018312.1 | PREDICTED: uncharacterized protein LOC105121394 [Populus euphratica] | 0 |
| O64768 | RAF-like serine/threonine-protein kinase 24 OS=Arabidopsis thaliana OX=3702 GN=RAF24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2M006 | Uncharacterized protein LOC105121394 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology