Basic Information
Locus ID:
nbisL1-mrna-9641
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RNA-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 8267878 | 8270033 | - | nbisL1-mrna-9641 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 27,944.90 Da | 51.76 | 63.64 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 154 | 236 | 9.05988E-35 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 156 | 226 | 2.5E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 130 | 248 | 4.7E-15 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 150 | 240 | 7.1E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 155 | 231 | 4.5E-5 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 154 | 240 | 11.946341 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.2 | nucleotide binding;nucleic acid binding. | 0 |
| RefSeq | XP_012066049.1 | RNA-binding protein 2 [Jatropha curcas] | 0 |
| Q8H0P8 | RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2KM10 | Uncharacterized protein MANES_02G177500 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology