Basic Information
Locus ID:
nbisL1-mrna-9610
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000011F_pilon | 1878304 | 1883334 | + | nbisL1-mrna-9610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 59,389.49 Da | 45.00 | 112.32 | 0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13136 | MATE_DinF_like | 104 | 539 | 4.174E-99 | IPR044644 |
| Pfam | PF01554 | MatE | 201 | 292 | 9.7E-7 | IPR002528 |
| Pfam | PF01554 | MatE | 354 | 501 | 8.0E-12 | IPR002528 |
| TIGRFAM | TIGR00797 | matE: MATE efflux family protein | 111 | 519 | 2.0E-94 | IPR002528 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 63 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G38330.1 | MATE efflux family protein. | 0 |
| RefSeq | XP_021653021.1 | protein DETOXIFICATION 44, chloroplastic-like [Hevea brasiliensis] | 0 |
| Q84K71 | Protein DETOXIFICATION 44, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DTX44 PE=2 SV=1 | 0 | |
| TrEMBL | B9SL10 | Protein DETOXIFICATION OS=Ricinus communis OX=3988 GN=RCOM_0848190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology