Basic Information
Locus ID:
nbisL1-mrna-9601
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000193F_pilon | 2899397 | 2905490 | + | nbisL1-mrna-9601 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 102,584.80 Da | 68.15 | 64.78 | -1.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 814 | 854 | 3.41825E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 812 | 859 | 8.2E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 814 | 861 | 3.36E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 795 | 865 | 1.5E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 815 | 854 | 10.748424 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 561 | 602 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 479 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 147 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 460 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 684 | 699 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 511 | 542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 669 | 700 | - | - |
| Coils | Coil | Coil | 744 | 764 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021659180.1 | uncharacterized protein LOC110649078 isoform X1 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A251KI60 | RING-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_07G093800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology