Basic Information
Locus ID:
nbisL1-mrna-9591
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Short Name:
PDC3
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000011F_pilon | 1784077 | 1786761 | + | nbisL1-mrna-9591 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 47,767.21 Da | 34.99 | 95.37 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 48 | 208 | 8.37604E-93 | - |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 44 | 212 | 1.1E-35 | IPR012001 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 241 | 353 | 2.2E-19 | IPR012000 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 236 | 384 | 1.03E-31 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 44 | 219 | 8.42E-45 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 41 | 217 | 4.6E-61 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 231 | 393 | 2.3E-40 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01320.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_021289381.1 | pyruvate decarboxylase 2 [Herrania umbratica] | 0 |
| Q9M040 | Pyruvate decarboxylase 4 OS=Arabidopsis thaliana OX=3702 GN=PDC4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2J9Z4 | pyruvate decarboxylase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology