Basic Information
Locus ID:
nbisL1-mrna-9582
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Serine/Threonine protein kinases, catalytic domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 878345 | 882957 | - | nbisL1-mrna-9582 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 36,777.46 Da | 40.30 | 91.03 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14137 | STKc_GSK3 | 37 | 267 | 1.04379E-124 | IPR039192 |
| Pfam | PF00069 | Protein kinase domain | 150 | 265 | 5.4E-16 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 45 | 265 | 4.37E-42 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 138 | 267 | 4.6E-39 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 28 | 116 | 1.4E-18 | - |
| SMART | SM00220 | serkin_6 | 41 | 268 | 4.4E-12 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 309 | 11.764448 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05840.1 | Protein kinase superfamily protein. encodes a SHAGGY-like kinase involved in meristem organization. | 0 |
| RefSeq | XP_039051593.1 | shaggy-related protein kinase alpha-like [Hibiscus syriacus] | 0 |
| P43289 | Shaggy-related protein kinase gamma OS=Arabidopsis thaliana OX=3702 GN=ASK3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2X6L0 | non-specific serine/threonine protein kinase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116984pilonHSYRG00099 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 2 | Ah013714, Ah029388 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.2341s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g24170 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9582 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.903 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00018796 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0404751, Pt_Chr0506121 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr0G000570, Chr11G006120 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G720900 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5BG070380 |
| Poaceae | Triticum aestivum | 2 | TraesCS1A02G213200.1.cds1, TraesCS3A02G125000.1.cds1 |