Basic Information
Locus ID:
nbisL1-mrna-9575
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000193F_pilon | 2718766 | 2722815 | + | nbisL1-mrna-9575 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 73,375.61 Da | 37.51 | 98.30 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 410 | 449 | 4.3E-11 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 493 | 531 | 1.9E-6 | IPR000225 |
| Pfam | PF04564 | U-box domain | 287 | 312 | 2.0E-6 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 379 | 654 | 1.73E-49 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 286 | 311 | 3.96E-7 | - |
| Gene3D | G3DSA:1.20.930.20 | - | 50 | 160 | 1.7E-9 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 343 | 492 | 1.4E-28 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 493 | 659 | 1.5E-27 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 281 | 315 | 9.3E-9 | IPR013083 |
| SMART | SM00185 | arm_5 | 492 | 532 | 0.034 | IPR000225 |
| SMART | SM00185 | arm_5 | 574 | 614 | 280.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 533 | 573 | 11.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 451 | 491 | 0.02 | IPR000225 |
| SMART | SM00185 | arm_5 | 410 | 450 | 1.6E-6 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 462 | 504 | 9.3974 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 421 | 463 | 14.0524 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 286 | 311 | 10.705063 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_021657630.1 | U-box domain-containing protein 14 [Hevea brasiliensis] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JW42 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology