Basic Information
Locus ID:
nbisL1-mrna-956
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
transcriptional co-repressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 7798669 | 7803876 | - | nbisL1-mrna-956 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 47,932.35 Da | 49.95 | 74.22 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 215 | 246 | 0.037 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 312 | 341 | 0.0023 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 215 | 430 | 6.6E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 265 | 431 | 3.9E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 139 | 264 | 1.0E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 392 | 431 | 0.64 | IPR001680 |
| SMART | SM00320 | WD40_4 | 266 | 306 | 3.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 207 | 246 | 0.0023 | IPR001680 |
| SMART | SM00320 | WD40_4 | 350 | 389 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 309 | 347 | 3.4E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 214 | 255 | 9.238559 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 399 | 431 | 9.599237 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 399 | 431 | 9.806668 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 273 | 315 | 10.274523 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 293 | 307 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 79 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_038997055.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 [Hibiscus syriacus] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2XYG5 | LisH dimerization motif,WD40/YVTN repeat-like-containing domain isoform 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116962pilonHSYRG00923 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology