Basic Information
Locus ID:
nbisL1-mrna-9541
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 7446349 | 7448480 | + | nbisL1-mrna-9541 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 35,950.23 Da | 29.91 | 92.88 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 21 | 311 | 9.1E-72 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 16 | 314 | 1.15E-96 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 17 | 107 | 1.2E-30 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 109 | 318 | 2.1E-70 | - |
| SMART | SM00220 | serkin_6 | 21 | 311 | 1.1E-95 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 21 | 311 | 45.629513 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 27 | 50 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 148 | 160 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20930.1 | cyclin-dependent kinase B2;2. Cyclin-dependent kinase, expressed in flowers and suspension cell culture, expression peaks during M phase in synchronized cultures. Required for proper organization of the shoot apical meristem and for hormone signaling. Expressed in the shoot apical meristem. Involved in regulation of the G2/M transition of the mitotic cell cycle. | 0 |
| RefSeq | XP_002510736.2 | cyclin-dependent kinase B2-2 [Ricinus communis] | 0 |
| Q8LG64 | Cyclin-dependent kinase B2-2 OS=Arabidopsis thaliana OX=3702 GN=CDKB2-2 PE=1 SV=2 | 0 | |
| TrEMBL | B9R8U3 | CDK, putative OS=Ricinus communis OX=3988 GN=RCOM_1602240 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology