Basic Information
Locus ID:
nbisL1-mrna-9471
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 63277264 | 63281271 | + | nbisL1-mrna-9471 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 52,492.57 Da | 41.74 | 95.38 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 277 | 422 | 2.5E-17 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 45 | 257 | 1.96E-30 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 276 | 439 | 7.3E-32 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 267 | 455 | 4.6E-32 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 102 | 266 | 5.1E-33 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 36 | 99 | 3.9E-7 | IPR032675 |
| SMART | SM00220 | serkin_6 | 196 | 425 | 4.9E-5 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 107 | 425 | 17.686594 | IPR000719 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 26 | 7.0 | - |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 278 | 290 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01950.2 | - | 0 |
| RefSeq | XP_040943340.1 | probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Gossypium hirsutum] | 0 |
| C0LGD7 | Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana OX=3702 GN=At1g06840 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0B0N4H5 | Protein kinase domain-containing protein OS=Gossypium arboreum OX=29729 GN=F383_05597 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg16731, jg3143, jg38070 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg2111 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G004820 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9471 |
| Poaceae | Oryza coarctata | 1 | Oco09G012410 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3BG087690 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5703 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4640 |
| Zosteraceae | Zostera marina | 1 | Zosma02g17350.v3.1 |