Basic Information
Locus ID:
nbisL1-mrna-9461
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 63179118 | 63181801 | - | nbisL1-mrna-9461 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.57 | 45,786.37 Da | 38.74 | 80.25 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 254 | 287 | 0.15 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 294 | 331 | 2.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 208 | 244 | 0.0064 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 14 | 85 | 9.7E-23 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 358 | 389 | 0.0027 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 162 | 195 | 0.092 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 118 | 393 | 3.66E-48 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 407 | 1.1E-125 | IPR015943 |
| SMART | SM00320 | WD40_4 | 247 | 287 | 6.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 204 | 244 | 0.0025 | IPR001680 |
| SMART | SM00320 | WD40_4 | 350 | 390 | 0.015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 291 | 331 | 7.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 153 | 195 | 2.2E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 162 | 197 | 11.176815 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 298 | 333 | 13.248743 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 162 | 197 | 9.361965 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 298 | 333 | 10.996502 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 254 | 289 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 211 | 253 | 10.876051 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 357 | 391 | 9.071468 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 182 | 196 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 318 | 332 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 182 | 196 | 8.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 274 | 288 | 8.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 318 | 332 | 8.1E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_039001789.1 | WD-40 repeat-containing protein MSI2-like [Hibiscus syriacus] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A3AGF9 | WD-40 repeat-containing protein MSI1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110474pilonHSYRG00226 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology