Basic Information
Locus ID:
nbisL1-mrna-9460
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000011F_pilon | 1001978 | 1010795 | - | nbisL1-mrna-9460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.95 | 81,414.59 Da | 39.70 | 78.35 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15567 | PHD4_NSD | 434 | 473 | 1.70231E-15 | - |
| Pfam | PF16135 | Tify domain binding domain | 259 | 294 | 2.0E-8 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 383 | 416 | 2.0E-6 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 493 | 553 | 2.66E-6 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 429 | 475 | 1.5E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 425 | 480 | 1.0E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 497 | 558 | 1.5E-9 | IPR013083 |
| SMART | SM00249 | PHD_3 | 500 | 557 | 0.003 | IPR001965 |
| SMART | SM00249 | PHD_3 | 433 | 474 | 1.4E-10 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 498 | 559 | 8.8047 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 431 | 476 | 10.166399 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 501 | 556 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 434 | 473 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 113 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_021602241.1 | uncharacterized protein LOC110607443 isoform X1 [Manihot esculenta] | 0 |
| Q14839 | Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens OX=9606 GN=CHD4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A067KHI8 | PHD-type domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_09035 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology