Basic Information
Locus ID:
nbisL1-mrna-9426
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Short Name:
UBP16
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 13681545 | 13688756 | - | nbisL1-mrna-9426 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.25 | 111,800.43 Da | 60.34 | 71.16 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 569 | 838 | 2.1E-31 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 565 | 858 | 3.92E-73 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 561 | 863 | 8.3E-77 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 569 | 876 | 39.717022 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 570 | 585 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 409 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 980 | 1004 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 935 | 957 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 980 | 1028 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1005 | 1028 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 875 | 905 | - | - |
| Coils | Coil | Coil | 38 | 58 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_002307344.3 | - | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L7B7 | Ubiquitin carboxyl-terminal hydrolase 16-like OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology