Basic Information
Locus ID:
nbisL1-mrna-9406
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 6208803 | 6214271 | + | nbisL1-mrna-9406 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 90,095.01 Da | 44.23 | 66.45 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15489 | PHD_SF | 385 | 432 | 8.34813E-11 | - |
| CDD | cd04370 | BAH | 699 | 826 | 1.52022E-15 | - |
| Pfam | PF01426 | BAH domain | 701 | 825 | 3.0E-8 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 386 | 433 | 3.2E-8 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 376 | 441 | 2.44E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 337 | 440 | 1.3E-11 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 679 | 827 | 8.2E-27 | IPR043151 |
| SMART | SM00439 | BAH_4 | 700 | 827 | 0.0031 | IPR001025 |
| SMART | SM00249 | PHD_3 | 385 | 433 | 2.9E-7 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 383 | 435 | 9.445499 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 700 | 827 | 13.209511 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 386 | 432 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 470 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 544 | 558 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 267 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 544 | 572 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 267 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 477 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 238 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50620.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_021655470.1 | uncharacterized protein LOC110646362 [Hevea brasiliensis] | 0 |
| Q5PNS0 | PHD finger protein At3g20280 OS=Arabidopsis thaliana OX=3702 GN=At3g20280 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2KSR2 | Uncharacterized protein MANES_15G066000 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg21564, jg24571, jg24572 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12203 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008912 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g089200 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg18347, Sbi_jg36730, Sbi_jg36732 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4675 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017424 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23471, Sgl28598 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000009736, gene:ENSEOMG00000028115 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0023590, CQ.Regalona.r1.4BG0024900 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30156210, pistato.v30158710 |
| Apiaceae | Apium graveolens | 2 | Ag3G00481, Ag9G00996 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G012480 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696217, gene-LOC103713628 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2106.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G29904, Ftri7G04246 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G50620.1, AT3G20280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011311m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g37440.v2.2, Sp3g18310.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g043610.2N, BniB06g030340.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g09420 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g06300, gene.Thate05g06860 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2496 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1943 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008734 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03434, Lb2G10881 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.1276, AH07.3244, BH06.1323, BH07.3072, CH06.1432 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2BG0198990 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0609950.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_025306 |
| Poaceae | Oryza coarctata | 4 | Oco03G020010, Oco04G020780, Oco11G008010, Oco12G008060 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g48800.1, LOC_Os02g48810.1, LOC_Os06g20410.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G256900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203552, Pt_Chr0303862 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G003530, Chr09G021480, Chr15G004950, Chr21G005610 |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G516600, Tel7E01G405400 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC5BG005160, gene_TRIDC5BG031310 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS6A02G282700.1, TraesCS6B02G311000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb189420_P001, Zm00001eb252930_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22001, nbis-gene-8891 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14292, Zma_g17043 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1461, evm.TU.LG14.738 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g22810 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.124, evm.TU.Scaffold_8_RagTag.1598 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-8713 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3980, nbisL1-mrna-416 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15092, nbisL1-mrna-22294 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000018l.63, evm.TU.utg000028l.74 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003690 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-8038, nbisL1-mrna-9406 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22639, nbisL1-mrna-22677 |
| Salicaceae | Populus euphratica | 1 | populus_peu00922 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132616870, gene-LOC132636315 |
| Solanaceae | Solanum chilense | 1 | SOLCI006720500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007659, gene-LOC107026536 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.24698_chr08_+, gene_16914 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2683, TC06G0399 |
| Zosteraceae | Zostera marina | 1 | Zosma01g03900.v3.1 |