Basic Information
Locus ID:
nbisL1-mrna-9404
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 62626447 | 62634417 | + | nbisL1-mrna-9404 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 94,118.88 Da | 43.90 | 85.99 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 15 | 267 | 6.96579E-69 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 140 | 177 | 8.6E-10 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 58 | 93 | 1.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 99 | 135 | 1.5E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 181 | 219 | 5.3E-8 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 700 | 856 | 1.0E-52 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 16 | 50 | 0.0061 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 15 | 300 | 1.28E-70 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 145 | 345 | 9.5E-38 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 7 | 144 | 2.7E-34 | IPR015943 |
| SMART | SM00320 | WD40_4 | 180 | 219 | 6.7E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 222 | 260 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 54 | 93 | 2.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 138 | 177 | 1.0E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 96 | 135 | 1.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 11 | 51 | 0.0024 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 61 | 102 | 15.387508 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 18 | 50 | 8.676514 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 145 | 182 | 13.527399 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 103 | 144 | 15.253835 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 187 | 222 | 12.921038 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 18 | 60 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 145 | 186 | 17.626528 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 187 | 228 | 16.256382 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 103 | 137 | 11.787407 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 61 | 95 | 11.471045 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 164 | 178 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 206 | 220 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 164 | 178 | 3.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 206 | 220 | 3.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 122 | 136 | 3.3E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 7 | 859 | 20.187407 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 477 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 419 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_039001772.1 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4-like isoform X4 [Hibiscus syriacus] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A3AJM4 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110474pilonHSYRG00115 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology