Basic Information
Locus ID:
nbisL1-mrna-9404
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Ubiquitin fusion degradation protein 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000011F_pilon | 689004 | 690145 | + | nbisL1-mrna-9404 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 18,489.40 Da | 61.80 | 50.77 | -0.97 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 2 | 36 | 1.3E-10 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 1 | 34 | 9.3E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 169 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_021671625.1 | ubiquitin fusion degradation protein 1 homolog isoform X3 [Hevea brasiliensis] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2P2LDP4 | Ubiquitin fusion degradation protein 1 homolog OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology