Basic Information
Locus ID:
nbisL1-mrna-9397
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 6140848 | 6147974 | - | nbisL1-mrna-9397 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 88,996.18 Da | 48.62 | 91.95 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 360 | 660 | 1.75898E-165 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 44 | 342 | 2.28605E-166 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 365 | 655 | 1.7E-28 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 44 | 342 | 2.51E-38 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 359 | 661 | 8.63E-44 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 358 | 660 | 8.0E-43 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 43 | 342 | 7.4E-36 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 44 | 343 | 33.233196 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 359 | 661 | 37.902256 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_002529027.2 | glycerophosphodiester phosphodiesterase GDPDL3 [Ricinus communis] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K3S5 | glycerophosphodiester phosphodiesterase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology