Basic Information
Locus ID:
nbisL1-mrna-9397
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 13348217 | 13354712 | + | nbisL1-mrna-9397 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 72,607.92 Da | 35.79 | 77.64 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 8 | 302 | 3.83663E-83 | - |
| CDD | cd10317 | RGL4_C | 443 | 629 | 5.43829E-58 | - |
| CDD | cd10316 | RGL4_M | 332 | 431 | 2.13015E-32 | IPR029413 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 355 | 427 | 9.3E-25 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 6 | 201 | 4.8E-90 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 441 | 628 | 1.1E-57 | IPR029411 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 438 | 629 | 8.93E-50 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 331 | 420 | 2.35E-8 | IPR013784 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 14 | 292 | 4.71E-5 | IPR011013 |
| Gene3D | G3DSA:2.70.98.10 | - | 10 | 306 | 1.0E-7 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 330 | 427 | 6.8E-6 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 439 | 629 | 1.7E-19 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_011016984.1 | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105120478 [Populus euphratica] | 0 |
| TrEMBL | A0A836EAW6 | rhamnogalacturonan endolyase OS=Salix suchowensis OX=1278906 GN=IMY05_002G0095200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology