halophFGD

Basic Information

Locus ID: nbisL1-mrna-9392

Species & Taxonomic ID: Rhizophora apiculata & 106626

Genome Assembly: GCA_037832385.1

Description: eukaryotic translation initiation factor

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	6110746	6117220	-	nbisL1-mrna-9392

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.44	150,367.02 Da	35.87	77.00	-0.76

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16266	IF2_aeIF5B_IV	1241	1336	8.50268E-28	-
CDD	cd03703	aeIF5B_II	1004	1112	9.59658E-52	-
CDD	cd01887	IF2_eIF5B	781	991	1.27413E-83	-
Pfam	PF03144	Elongation factor Tu domain 2	1017	1092	1.5E-10	IPR004161
Pfam	PF11987	Translation-initiation factor 2	1116	1219	4.6E-23	IPR023115
Pfam	PF00009	Elongation factor Tu GTP binding domain	782	988	6.1E-34	IPR000795
SUPERFAMILY	SSF50447	Translation proteins	1237	1368	7.32E-29	IPR009000
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	775	1069	3.88E-65	IPR027417
SUPERFAMILY	SSF52156	Initiation factor IF2/eIF5b, domain 3	1103	1232	4.71E-36	IPR036925
Gene3D	G3DSA:3.40.50.300	-	771	1000	1.8E-72	IPR027417
Gene3D	G3DSA:2.40.30.10	Translation factors	1001	1121	1.5E-52	-
Gene3D	G3DSA:3.40.50.10050	-	1122	1226	3.4E-39	IPR036925
Gene3D	G3DSA:2.40.30.10	Translation factors	1233	1369	1.1E-57	-
TIGRFAM	TIGR00231	small_GTP: small GTP-binding protein domain	783	908	7.0E-16	IPR005225
ProSiteProfiles	PS51722	Translational (tr)-type guanine nucleotide-binding (G) domain profile.	778	994	44.725105	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	782	795	6.5E-7	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	862	873	6.5E-7	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	846	856	6.5E-7	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	898	907	6.5E-7	IPR000795
MobiDBLite	mobidb-lite	consensus disorder prediction	374	388	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	645	669	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	589	691	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	624	638	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	45	573	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	81	95	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	182	196	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	670	685	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	292	309	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	422	441	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	722	768	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	128	142	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	345	367	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	449	573	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	48	62	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	740	768	-	-
Coils	Coil	Coil	426	465	-	-
Coils	Coil	Coil	491	557	-	-

Gene Ontology

Molecular Function:

GO:0003924 (GTPase activity) GO:0005525 (GTP binding)

KEGG Pathway

KO Term:

K02703 (photosystem II P680 reaction center D1 protein [EC:1.10.3.9])

Pathway:

ko00195 (Photosynthesis) map00195 (Photosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Module:

M00161 (Photosystem II)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G76810.1	eukaryotic translation initiation factor 2 (eIF-2) family protein.
RefSeq	XP_021660503.1	eukaryotic translation initiation factor 5B [Hevea brasiliensis]
Swiss-Prot	G0S8G9	Eukaryotic translation initiation factor 5B OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=CTHT_0029840 PE=1 SV=2
TrEMBL	A0A2P2JHH8	Eukaryotic translation initiation factor 5B OS=Rhizophora mucronata OX=61149 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg6070
Aizoaceae	Mesembryanthemum crystallinum	2	gene_15301, gene_245
Amaranthaceae	Atriplex hortensis	3	Ah003421, Ah018262, Ah018421
Amaranthaceae	Beta vulgaris	3	BVRB_3g050350, BVRB_7g173810, BVRB_9g202210
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg14893, Sbi_jg28723, Sbi_jg2920, Sbi_jg31007 ... Sbi_jg31009, Sbi_jg55702
Amaranthaceae	Salicornia europaea	7	Seu_jg22981, Seu_jg22982, Seu_jg26226, Seu_jg6833 ... Seu_jg6939, Seu_jg6940, Seu_jg6959
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00004375, GOSA_00004376, GOSA_00017916
Amaranthaceae	Suaeda glauca	2	Sgl01135, Sgl06220
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000003077, gene:ENSEOMG00000021883 ... gene:ENSEOMG00000022784, gene:ENSEOMG00000031997, gene:ENSEOMG00000044257
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.3AG0006900, CQ.Regalona.r1.3AG0006930
Anacardiaceae	Pistacia vera	1	pistato.v30037970
Apiaceae	Apium graveolens	6	Ag3G00748, Ag3G00749, Ag3G01911, Ag4G02445, Ag4G02446 ... Ag7G00454
Arecaceae	Cocos nucifera	2	COCNU_14G000450, scaffold033353G000040
Arecaceae	Phoenix dactylifera	2	gene-LOC103720357, gene-LOC103721040
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.1583.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G06402, Ftri12G27292, Ftri9G10744
Brassicaceae	Arabidopsis thaliana	5	AT1G21160.1, AT1G76720.1, AT1G76810.1, AT1G76820.1 ... AT2G27700.2
Brassicaceae	Eutrema salsugineum	4	Thhalv10006634m.g.v1.0, Thhalv10018018m.g.v1.0 ... Thhalv10021382m.g.v1.0, Thhalv10022147m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g31970.v2.2
Brassicaceae	Brassica nigra	4	BniB02g016020.2N, BniB02g016030.2N, BniB03g009000.2N ... BniB05g073240.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq08G1632
Casuarinaceae	Casuarina glauca	1	Cgl08G1673
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno07g04590
Dunaliellaceae	Dunaliella salina	1	Dusal.0041s00031.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g24390
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG06.718
Plantaginaceae	Plantago ovata	8	Pov_00011481, Pov_00011596, Pov_00011597, Pov_00011598 ... Pov_00012015, Pov_00015017, Pov_00015018, Pov_00023099
Plumbaginaceae	Limonium bicolor	2	Lb2G10385, Lb3G16650
Poaceae	Echinochloa crus-galli	6	AH05.3560, BH05.1205, BH05.3558, CH01.2697, CH05.1503 ... CH05.3712
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_5AG0360980, gene-QOZ80_5AG0391570 ... gene-QOZ80_5BG0409430, gene-QOZ80_5BG0439620
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.1HG0094710.1
Poaceae	Lolium multiflorum	2	gene-QYE76_015006, gene-QYE76_042706
Poaceae	Oryza coarctata	3	Oco02G013470, Oco09G018380, Oco10G018310
Poaceae	Oryza sativa	4	LOC_Os01g40150.1, LOC_Os01g40170.1, LOC_Os05g51500.1 ... LOC_Os12g31880.1
Poaceae	Paspalum vaginatum	3	gene-BS78_08G078500, gene-BS78_08G078600 ... gene-BS78_09G258100
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0505892, Pt_Chr0703558
Poaceae	Sporobolus alterniflorus	11	Chr01G016380, Chr04G015670, Chr04G024780, Chr06G016320 ... Chr06G016340, Chr06G016350, Chr07G023610, Chr0G020300, Chr0G030010, Chr12G020410, Chr18G015880
Poaceae	Thinopyrum elongatum	4	Tel1E01G740900, Tel1E01G741100, Tel1E01G742100 ... Tel7E01G813100
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG064300, gene_TRIDC1BG073510 ... gene_TRIDC7AG066570, gene_TRIDC7BG060760
Poaceae	Triticum aestivum	6	TraesCS1A02G438600.2, TraesCS1B02G472500.1 ... TraesCS1D02G446400.1, TraesCS1D02G446900.2, TraesCS7A02G479800.2, TraesCS7B02G382100.1
Poaceae	Zea mays	1	Zm00001eb345280_P001
Poaceae	Zoysia japonica	2	nbis-gene-13527, nbis-gene-48615
Poaceae	Zoysia macrostachya	2	Zma_g25096, Zma_g27484
Portulacaceae	Portulaca oleracea	5	evm.TU.LG01.629, evm.TU.LG03.129, evm.TU.LG03.17 ... evm.TU.LG04.140, evm.TU.LG04.143
Posidoniaceae	Posidonia oceanica	1	gene.Posoc08g14760
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_8_RagTag.1614
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-19623, nbisL1-mrna-8731
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-402, nbisL1-mrna-8952
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-15078, nbisL1-mrna-15079, nbisL1-mrna-8068 ... nbisL1-mrna-8069
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000018l.50, evm.TU.utg000023l.36
Rhizophoraceae	Kandelia obovata	1	Maker00003101
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-19721, nbisL1-mrna-9392
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-23779
Salicaceae	Populus euphratica	5	populus_peu00417, populus_peu18706, populus_peu18723 ... populus_peu29630, populus_peu29631
Solanaceae	Lycium barbarum	1	gene-LOC132636476
Solanaceae	Solanum chilense	2	SOLCI001496400, SOLCI003795700
Solanaceae	Solanum pennellii	4	gene-LOC107014299, gene-LOC107014401, gene-LOC107017076 ... gene-LOC107023346
Tamaricaceae	Reaumuria soongarica	2	STRG.5392_chr02_+, gene_17626
Tamaricaceae	Tamarix chinensis	1	TC03G1943
Zosteraceae	Zostera marina	4	Zosma01g35560.v3.1, Zosma04g20870.v3.1, Zosma277g00050.v3.1 ... Zosma277g00060.v3.1