Basic Information
Locus ID:
nbisL1-mrna-9392
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 62523146 | 62527599 | + | nbisL1-mrna-9392 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.98 | 26,418.90 Da | 40.13 | 92.19 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00270 | DEAD/DEAH box helicase | 56 | 140 | 2.2E-15 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 32 | 191 | 7.23E-35 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 2 | 183 | 2.1E-29 | IPR027417 |
| SMART | SM00490 | helicmild6 | 133 | 203 | 2.4E-7 | IPR001650 |
| SMART | SM00487 | ultradead3 | 50 | 221 | 2.6E-8 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 31 | 59 | 11.240613 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 99 | 237 | 11.405221 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 62 | 148 | 10.282738 | IPR014001 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_016715648.2 | eukaryotic initiation factor 4A-3 [Gossypium hirsutum] | 0 |
| P41380 | Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0B0NL15 | Eukaryotic initiation factor 4A-3 OS=Gossypium arboreum OX=29729 GN=F383_01099 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology