Basic Information
Locus ID:
nbisL1-mrna-9390
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 13294865 | 13299195 | - | nbisL1-mrna-9390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.57 | 39,920.81 Da | 46.29 | 68.41 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 72 | 356 | 2.5E-87 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 243 | 346 | 7.36E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 240 | 359 | 1.0E-42 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 245 | 347 | 25.492111 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 210 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65670.2 | indole-3-acetic acid inducible 9. auxin (indole-3-acetic acid) induced gene | 0 |
| RefSeq | XP_002302351.1 | auxin-responsive protein IAA9 isoform X2 [Populus trichocarpa] | 0 |
| Q38827 | Auxin-responsive protein IAA9 OS=Arabidopsis thaliana OX=3702 GN=IAA9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JVI6 | Auxin-responsive protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology