Basic Information
Locus ID:
nbisL1-mrna-9386
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
1-phosphatidylinositol-3-phosphate 5-kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000193F_pilon | 1401778 | 1410936 | + | nbisL1-mrna-9386 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 186,946.66 Da | 48.76 | 75.85 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03334 | Fab1_TCP | 281 | 514 | 3.08334E-120 | - |
| CDD | cd17300 | PIPKc_PIKfyve | 1394 | 1657 | 2.0663E-147 | IPR044769 |
| Pfam | PF00118 | TCP-1/cpn60 chaperonin family | 285 | 508 | 1.0E-26 | IPR002423 |
| Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 1433 | 1599 | 1.0E-32 | IPR002498 |
| SUPERFAMILY | SSF52029 | GroEL apical domain-like | 308 | 480 | 1.2E-39 | IPR027409 |
| SUPERFAMILY | SSF56104 | SAICAR synthase-like | 1390 | 1657 | 2.35E-78 | - |
| Gene3D | G3DSA:3.30.800.10 | Phosphatidylinositol Phosphate Kinase II Beta | 1361 | 1514 | 6.1E-36 | IPR027484 |
| Gene3D | G3DSA:3.50.7.10 | GroEL | 307 | 480 | 4.0E-51 | IPR027409 |
| Gene3D | G3DSA:3.30.810.10 | - | 1516 | 1658 | 3.1E-41 | - |
| SMART | SM00330 | PIPK_2 | 1367 | 1658 | 2.3E-124 | IPR002498 |
| ProSiteProfiles | PS51455 | Phosphatidylinositol phosphate kinase (PIPK) domain profile. | 1332 | 1657 | 57.658436 | IPR002498 |
| Coils | Coil | Coil | 930 | 950 | - | - |
| Coils | Coil | Coil | 978 | 998 | - | - |
| Coils | Coil | Coil | 210 | 230 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14270.1 | phosphatidylinositol-4-phosphate 5-kinase family protein. Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. | 0 |
| RefSeq | XP_021642012.1 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A-like isoform X1 [Hevea brasiliensis] | 0 |
| Q9LUM0 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B OS=Arabidopsis thaliana OX=3702 GN=FAB1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2M4X8 | 1-phosphatidylinositol-3-phosphate 5-kinase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology