Basic Information
Locus ID:
nbisL1-mrna-9383
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Triosephosphate isomerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000011F_pilon | 561535 | 565048 | + | nbisL1-mrna-9383 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 33,881.26 Da | 29.27 | 90.76 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00311 | TIM | 67 | 307 | 1.60478E-132 | IPR000652 |
| Pfam | PF00121 | Triosephosphate isomerase | 68 | 306 | 2.3E-90 | IPR000652 |
| SUPERFAMILY | SSF51351 | Triosephosphate isomerase (TIM) | 64 | 308 | 8.38E-95 | IPR035990 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 48 | 314 | 4.3E-114 | IPR013785 |
| TIGRFAM | TIGR00419 | tim: triose-phosphate isomerase | 68 | 298 | 6.5E-80 | IPR000652 |
| ProSiteProfiles | PS51440 | Triosephosphate isomerase (TIM) family profile. | 66 | 308 | 82.447372 | IPR000652 |
| ProSitePatterns | PS00171 | Triosephosphate isomerase active site. | 224 | 234 | - | IPR020861 |
| Hamap | MF_00147_B | Triosephosphate isomerase [tpiA]. | 65 | 308 | 57.651878 | IPR022896 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko00010 (Glycolysis / Gluconeogenesis)
map00010 (Glycolysis / Gluconeogenesis)
ko00051 (Fructose and mannose metabolism)
map00051 (Fructose and mannose metabolism)
ko00562 (Inositol phosphate metabolism)
map00562 (Inositol phosphate metabolism)
ko00710 (Carbon fixation by Calvin cycle)
map00710 (Carbon fixation by Calvin cycle)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21170.1 | triosephosphate isomerase. Encodes a plastidic triose phosphate isomerase. Mutants with reduced pdTPI levels have difficulty transitioning from heterotrophic to autotrophic growth. The related phenotypes, such as chlorosis in light-grown seedlings may result from an accumulation of dihydroxyacetone phosphate (DHAP) and methylglyoxal (MG) in these mutants. Both splice variants appear to be expressed, but the At2g21170.2 variant appears to have a much narrower expression range limited to roots. | 0 |
| RefSeq | XP_011037267.1 | PREDICTED: triosephosphate isomerase, chloroplastic-like [Populus euphratica] | 0 |
| Q9M4S8 | Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa OX=3747 GN=TPI PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2L0P7 | Triosephosphate isomeraseic-like OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology