Basic Information
Locus ID:
nbisL1-mrna-9356
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Oligouridylate-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000193F_pilon | 1203068 | 1208217 | + | nbisL1-mrna-9356 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 45,583.64 Da | 42.39 | 70.95 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 250 | 333 | 3.33107E-31 | - |
| CDD | cd12619 | RRM2_PUB1 | 130 | 204 | 4.01173E-51 | - |
| CDD | cd12352 | RRM1_TIA1_like | 46 | 116 | 1.71072E-35 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 271 | 327 | 8.7E-6 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 131 | 201 | 5.2E-19 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 46 | 112 | 5.1E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 238 | 337 | 2.58E-17 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 32 | 122 | 1.06E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 122 | 217 | 6.31E-29 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 229 | 338 | 1.6E-19 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 128 | 228 | 3.0E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 127 | 1.2E-20 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 130 | 203 | 9.2E-26 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 45 | 114 | 2.2E-14 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 130 | 203 | 0.0024 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 251 | 329 | 1.4E-9 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 250 | 333 | 14.163543 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 129 | 207 | 17.762232 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 44 | 118 | 14.675204 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_012077083.1 | oligouridylate-binding protein 1 [Jatropha curcas] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067KCI8 | Oligouridylate-binding protein 1-like OS=Jatropha curcas OX=180498 GN=JCGZ_07512 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology