Basic Information
Locus ID:
nbisL1-mrna-9356
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000011F_pilon | 410145 | 419792 | - | nbisL1-mrna-9356 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 205,037.06 Da | 48.32 | 86.64 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1478 | 1891 | 2.44518E-119 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1526 | 1896 | 7.3E-79 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 187 | 656 | 4.22E-40 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1470 | 1889 | 1.7E-93 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1418 | 1659 | 1.5E-42 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 178 | 488 | 2.1E-51 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1768 | 1894 | 1.1E-31 | - |
| SMART | SM00119 | hect_3 | 1492 | 1896 | 7.9E-84 | IPR000569 |
| SMART | SM00185 | arm_5 | 302 | 342 | 61.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 219 | 260 | 66.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 345 | 383 | 8.7 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1502 | 1896 | 56.769371 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 690 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1138 | 1176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 971 | 1030 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 691 | 722 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1286 | 1310 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1143 | 1175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1061 | 1079 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1287 | 1310 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 663 | 722 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 969 | 1123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1080 | 1114 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_011046281.1 | PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Populus euphratica] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067K0H3 | HECT-type E3 ubiquitin transferase OS=Jatropha curcas OX=180498 GN=JCGZ_18809 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology