Basic Information
Locus ID:
nbisL1-mrna-9352
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Short Name:
PRK3
Description:
Leucine-rich repeat receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000193F_pilon | 1184450 | 1186869 | - | nbisL1-mrna-9352 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 56,138.86 Da | 37.81 | 95.43 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 25 | 62 | 5.5E-10 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 115 | 174 | 3.6E-8 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 316 | 434 | 2.7E-10 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 24 | 180 | 6.8E-25 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 316 | 441 | 1.97E-22 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 21 | 195 | 3.2E-35 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 304 | 513 | 1.4E-21 | - |
| SMART | SM00219 | tyrkin_6 | 312 | 509 | 1.4E-5 | IPR020635 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 312 | 514 | 13.92695 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 278 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G42880.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_002516246.1 | pollen receptor-like kinase 3 [Ricinus communis] | 0 |
| Q9M1L7 | Pollen receptor-like kinase 3 OS=Arabidopsis thaliana OX=3702 GN=PRK3 PE=1 SV=1 | 0 | |
| TrEMBL | B9RR77 | Serine/threonine-protein kinase PBS1, putative OS=Ricinus communis OX=3988 GN=RCOM_0711010 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg17994, jg25174, jg27297, jg31769 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_6704, gene_9254 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah015039, Ah028750 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g169720, BVRB_8g190720 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg2014, Sbi_jg24709, Sbi_jg34487, Sbi_jg8572 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg20029, Seu_jg2753 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002818, GOSA_00022694 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl42748, Sgl42752, Sgl47495, Sgl47508, Sgl47512, Sgl73443 ... |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000007005, gene:ENSEOMG00000009919 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.7AG0006530, CQ.Regalona.r1.8AG0016570 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30118520, pistato.v30119200, pistato.v30260340 |
| Apiaceae | Apium graveolens | 3 | Ag5G01500, Ag8G00361, Ag9G01049 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G004770, COCNU_05G008340 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103705101, gene-LOC103709369, gene-LOC103716317 |
| Asteraceae | Flaveria trinervia | 5 | Ftri14G08047, Ftri18G02628, Ftri4G08028, Ftri8G03806 ... |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G72460.1, AT3G42880.1, AT5G20690.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10002439m.g.v1.0, Thhalv10015893m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp5g27540.v2.2, Sp6g23800.v2.2, SpUn0007_0040.v2.2 ... |
| Brassicaceae | Brassica nigra | 6 | BniB02g042180.2N, BniB03g039680.2N, BniB05g042830.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0793, Ceq06G0761 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0804, Cgl06G0783 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g12680 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g29850, gene.Thate01g29860 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 4 | nbisL1-mrna-187, nbisL1-mrna-4607, nbisL1-mrna-5123 ... |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.167, evm.TU.LG07.1343 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00001175, Pov_00004006, Pov_00039552, Pov_00039553 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17954 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.2004, BH04.2030, CH04.2370 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_6AG0512390, gene-QOZ80_6BG0464310 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0360590.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_027471, gene-QYE76_065898 |
| Poaceae | Oryza coarctata | 3 | Oco12G004560, Oco21G008610, Oco22G009840 |
| Poaceae | Oryza sativa | 4 | LOC_Os03g51060.1, LOC_Os05g38010.1, LOC_Os06g09860.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G213500, gene-BS78_10G074900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103303 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr07G015360, Chr11G020890, Chr14G003240, Chr21G002520 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G270500, Tel7E01G330900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG022820, gene_TRIDC4BG023360 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G150100.1, TraesCS4B02G149500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb166690_P001, Zm00001eb373880_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-34969, nbis-gene-43223, nbis-gene-46097 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19063, Zma_g31524 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG12.1606, evm.TU.LG16.1392, evm.TU.LG19.100 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g26930, gene.Posoc07g10310 |
| Rhizophoraceae | Bruguiera sexangula | 5 | evm.TU.48811.2, evm.TU.48812.2 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13898, nbisL1-mrna-27534 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-12832, nbisL1-mrna-2426, nbisL1-mrna-8402 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-1389, nbisL1-mrna-16978, nbisL1-mrna-8136 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000008l.664, evm.TU.utg000033l.417 ... |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-2021, nbisL1-mrna-3969, nbisL1-mrna-7469 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-22840, nbisL1-mrna-8115, nbisL1-mrna-9352 |
| Salicaceae | Populus euphratica | 4 | populus_peu02910, populus_peu11813, populus_peu11824 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132633517, gene-LOC132636927, gene-LOC132640904 |
| Solanaceae | Solanum chilense | 3 | SOLCI004537100, SOLCI005519000, SOLCI006560800 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107006747, gene-LOC107013667, gene-LOC107020038 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_2551, gene_9071 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0983 |
| Zosteraceae | Zostera marina | 3 | Zosma01g39170.v3.1, Zosma02g07440.v3.1, Zosma02g17430.v3.1 |