Basic Information
Locus ID:
nbisL1-mrna-9350
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 62117968 | 62122547 | - | nbisL1-mrna-9350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 46,008.39 Da | 58.58 | 82.89 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 219 | 266 | 1.11705E-14 | - |
| Pfam | PF12906 | RING-variant domain | 219 | 265 | 2.5E-13 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 215 | 269 | 9.42E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 273 | 5.8E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 218 | 266 | 5.8E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 211 | 272 | 21.441006 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 110 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039025717.1 | uncharacterized protein LOC120159125 [Hibiscus syriacus] | 0 |
| TrEMBL | A0A6A2YPA0 | BRCT domain-containing DNA repair protein, putative isoform 1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111342pilonHSYRG00266 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology