Basic Information
Locus ID:
nbisL1-mrna-9346
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000011F_pilon | 376512 | 379288 | + | nbisL1-mrna-9346 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.62 | 46,689.49 Da | 37.71 | 81.01 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 216 | 252 | 0.16 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 22 | 95 | 3.3E-22 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 360 | 395 | 0.0015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 302 | 339 | 2.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 257 | 295 | 0.0012 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 114 | 399 | 5.0E-49 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 414 | 6.8E-129 | IPR015943 |
| SMART | SM00320 | WD40_4 | 299 | 339 | 3.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 212 | 252 | 9.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 356 | 396 | 0.003 | IPR001680 |
| SMART | SM00320 | WD40_4 | 163 | 203 | 7.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 255 | 295 | 3.0E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 219 | 261 | 9.505904 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 306 | 341 | 11.391954 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 306 | 341 | 13.750016 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 262 | 297 | 9.606159 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 170 | 205 | 9.361965 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 170 | 205 | 11.176815 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 363 | 397 | 9.171722 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 326 | 340 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 190 | 204 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 190 | 204 | 3.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 282 | 296 | 3.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 326 | 340 | 3.6E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_024463944.1 | WD-40 repeat-containing protein MSI2 [Populus trichocarpa] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2J0N7 | WD-40 repeat-containing protein MSI2-like OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology