Basic Information
Locus ID:
nbisL1-mrna-934
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
66 kDa stress
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 9275001 | 9279465 | - | nbisL1-mrna-934 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 66,166.13 Da | 26.30 | 88.02 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 57 | 353 | 2.86762E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 60 | 85 | 0.0017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 186 | 213 | 0.014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 534 | 562 | 2.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 573 | 606 | 0.13 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 231 | 262 | 2.7E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 23 | 175 | 3.11E-21 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 140 | 607 | 2.62E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 8 | 606 | 1.2E-185 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 12 | 340 | 1.2E-185 | IPR015943 |
| SMART | SM00320 | WD40_4 | 314 | 354 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 438 | 476 | 2.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 135 | 175 | 0.0024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 567 | 606 | 0.0068 | IPR001680 |
| SMART | SM00320 | WD40_4 | 220 | 262 | 9.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 90 | 134 | 4.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 525 | 563 | 2.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 178 | 217 | 2.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 268 | 310 | 58.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 47 | 86 | 0.003 | IPR001680 |
| SMART | SM00320 | WD40_4 | 481 | 520 | 1.5E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 230 | 264 | 12.103769 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 575 | 611 | 10.14085 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 54 | 95 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 488 | 520 | 9.019239 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 531 | 565 | 8.781968 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 575 | 611 | 9.862871 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 531 | 572 | 10.70896 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 230 | 264 | 14.652308 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 488 | 520 | 10.742378 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 185 | 226 | 10.074014 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 249 | 263 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18060.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_038679635.1 | actin-interacting protein 1-2-like [Tripterygium wilfordii] | 0 |
| Q9LV35 | Actin-interacting protein 1-2 OS=Arabidopsis thaliana OX=3702 GN=AIP1-2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2J6K6 | Transducin family protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27003 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18574 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025366 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g142710 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12911, Sbi_jg52955 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8902 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023461 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl31060, Sgl36432 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001482, gene:ENSEOMG00000001942 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0012400, CQ.Regalona.r1.6BG0013000 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30150180, pistato.v30216710, pistato.v30216990 |
| Apiaceae | Apium graveolens | 3 | Ag3G02196, Ag7G01231, Ag9G02820 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G005740, COCNU_03G009290 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696946, gene-LOC103718996 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G32192 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G01330.1, AT3G18060.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000821m.g.v1.0, Thhalv10020321m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g12780.v2.2, Sp3g16180.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g046530.2N, BniB04g014820.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2859 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G3006 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g14440 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g20160 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.13 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00033251 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G36913, Lb0G37557, Lb2G13245 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.1254, BH02.838, CH02.956 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0007980, gene-QOZ80_1BG0056760 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0222780.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_049136 |
| Poaceae | Oryza coarctata | 2 | Oco01G000970, Oco02G001000 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g03510.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G081000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205513, Pt_Chr0206978 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G024520, Chr03G003360, Chr05G002430, Chr20G008630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G060700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG005380, gene_TRIDC3BG004980 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G047800.1, TraesCS3B02G034400.1 ... |
| Poaceae | Zea mays | 8 | Zm00001eb076360_P001, Zm00001eb125700_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7093 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9879 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.802, evm.TU.LG21.477 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g21510, gene.Posoc04g21560 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.732 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14401 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14439 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12347 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000061l.18 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008891 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14443, nbisL1-mrna-934 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-24870, nbisL1-mrna-8406 |
| Salicaceae | Populus euphratica | 2 | populus_peu28281, populus_peu29733 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633242 |
| Solanaceae | Solanum chilense | 1 | SOLCI000442600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014336 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.9226_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0994 |
| Zosteraceae | Zostera marina | 1 | Zosma04g19370.v3.1 |