Basic Information
Locus ID:
nbisL1-mrna-9317
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 9190647 | 9196335 | - | nbisL1-mrna-9317 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 122,431.15 Da | 45.34 | 77.02 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 835 | 1086 | 1.38248E-106 | - |
| CDD | cd06410 | PB1_UP2 | 4 | 100 | 1.72052E-41 | - |
| Pfam | PF00564 | PB1 domain | 18 | 100 | 2.7E-16 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 831 | 1086 | 1.5E-59 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 817 | 1086 | 1.66E-73 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 16 | 104 | 7.85E-19 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 911 | 1105 | 8.9E-52 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 19 | 102 | 9.6E-12 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 822 | 910 | 1.7E-21 | - |
| SMART | SM00220 | serkin_6 | 829 | 1089 | 2.4E-52 | IPR000719 |
| SMART | SM00666 | PB1_new | 15 | 102 | 2.6E-25 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 829 | 1089 | 39.099602 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 835 | 857 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 948 | 960 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1013 | 1035 | 3.7E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 905 | 918 | 3.7E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 942 | 960 | 3.7E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1057 | 1079 | 3.7E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 559 | 590 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 555 | 603 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79570.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_002307185.4 | uncharacterized protein LOC7480431 [Populus trichocarpa] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8D296 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_019030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology