Basic Information
Locus ID:
nbisL1-mrna-9315
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Receptor-like cytosolic serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000011F_pilon | 211740 | 212875 | - | nbisL1-mrna-9315 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 33,520.95 Da | 44.11 | 93.27 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 220 | 297 | 3.1E-10 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 200 | 298 | 1.26E-19 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 182 | 290 | 7.3E-25 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 217 | 306 | 12.004726 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 223 | 245 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16670.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_011045452.1 | PREDICTED: serine/threonine-protein kinase CDG1-like isoform X1 [Populus euphratica] | 0 |
| Q93YN1 | Cold-responsive protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRPK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U5Q5R0 | Serine/threonine-protein kinase CDG1-like isoform X1 OS=Populus alba OX=43335 GN=D5086_0000136510 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg28913, jg846 |
| Apiaceae | Apium graveolens | 1 | Ag9G00835 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5154 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10971 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9315 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.1208 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005547 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-24118, nbisL1-mrna-24119 |
| Salicaceae | Populus euphratica | 2 | populus_peu08649, populus_peu36701 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599368 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012481 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7940 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0196 |