Basic Information
Locus ID:
nbisL1-mrna-931
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000003F_pilon | 5614273 | 5615788 | - | nbisL1-mrna-931 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 17,726.95 Da | 21.70 | 90.98 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 4 | 95 | 3.8E-22 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 105 | 150 | 2.02E-9 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 95 | 1.66E-24 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 35 | 2.9E-11 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 36 | 108 | 6.5E-9 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 109 | 150 | 2.0E-8 | - |
| SMART | SM00220 | serkin_6 | 1 | 133 | 6.3E-5 | IPR000719 |
| SMART | SM00054 | efh_1 | 116 | 144 | 0.0036 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 153 | 19.241333 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 112 | 147 | 12.811786 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 125 | 137 | - | IPR018247 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31500.1 | calcium-dependent protein kinase 24. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_002533526.1 | calcium-dependent protein kinase 24 [Ricinus communis] | 0 |
| Q9SIQ7 | Calcium-dependent protein kinase 24 OS=Arabidopsis thaliana OX=3702 GN=CPK24 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A4L2M8 | Calcium-dependent protein kinase 2 (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_17569 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah039308 |
| Apiaceae | Apium graveolens | 2 | Ag1G00989, Ag2G00231 |
| Brassicaceae | Brassica nigra | 1 | BniB02g027910.2N |
| Poaceae | Zea mays | 3 | Zm00001eb016070_P001, Zm00001eb024950_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-1403, nbis-gene-38648 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16587 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-931 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13613, nbisL1-mrna-18710 |
| Salicaceae | Populus euphratica | 1 | populus_peu24041 |