Basic Information
Locus ID:
nbisL1-mrna-930
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000003F_pilon | 5604550 | 5613132 | + | nbisL1-mrna-930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 64,280.72 Da | 48.64 | 60.00 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 149 | 199 | 4.03174E-16 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 218 | 280 | 2.6E-16 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 297 | 345 | 8.5E-10 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 143 | 227 | 1.06E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 299 | 347 | 6.63E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 218 | 287 | 1.68E-13 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 276 | 531 | 1.4E-86 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 142 | 232 | 1.1E-17 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 284 | 354 | 0.036 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 218 | 280 | 1.9E-24 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 145 | 358 | 52.340858 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 149 | 193 | 9.376395 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 550 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 568 | - | - |
| Coils | Coil | Coil | 359 | 386 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_021658432.1 | probable E3 ubiquitin-protein ligase ARI7 isoform X2 [Hevea brasiliensis] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LQM5 | RBR-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology