Basic Information
Locus ID:
nbisL1-mrna-927
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 9215021 | 9219408 | - | nbisL1-mrna-927 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 50,100.06 Da | 45.53 | 72.43 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 289 | 311 | 3.3E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 326 | 350 | 3.6E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 365 | 393 | 5.0E-11 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 358 | 394 | 5.02E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 283 | 315 | 4.71E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 321 | 355 | 1.0E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 396 | 428 | 2.6E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 279 | 319 | 8.7E-14 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 356 | 395 | 1.6E-13 | - |
| SMART | SM00547 | zf_4 | 367 | 391 | 6.0E-8 | IPR001876 |
| SMART | SM00547 | zf_4 | 289 | 313 | 9.2E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 328 | 352 | 6.8E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 400 | 424 | 0.074 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 398 | 427 | 9.563004 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 287 | 316 | 9.777556 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 326 | 355 | 9.043563 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 365 | 394 | 11.313295 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 369 | 388 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 402 | 421 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 291 | 310 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_021909321.1 | zinc finger protein VAR3, chloroplastic [Carica papaya] | 0 |
| TrEMBL | A0A2P2IWN0 | Zinc finger protein VAR3ic OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology