Basic Information
Locus ID:
nbisL1-mrna-9214
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000193F_pilon | 345412 | 347628 | + | nbisL1-mrna-9214 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 17,437.36 Da | 24.76 | 77.94 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 86 | 156 | 6.80227E-32 | - |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 86 | 154 | 4.6E-28 | IPR020189 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 15 | 93 | 1.35E-26 | IPR008991 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 86 | 156 | 3.6E-25 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 86 | 159 | 1.4E-34 | - |
| Gene3D | G3DSA:2.30.30.30 | - | 1 | 85 | 1.8E-43 | IPR014722 |
| SMART | SM01376 | eIF_5a_2 | 85 | 154 | 4.2E-31 | IPR020189 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 17 | 153 | 7.2E-41 | IPR001884 |
| PIRSF | PIRSF003025 | Transl_init_eIF5A | 1 | 158 | 6.3E-66 | IPR001884 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 50 | 57 | - | IPR019769 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13950.1 | eukaryotic elongation factor 5A-1. Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced. | 0 |
| RefSeq | XP_022730076.1 | eukaryotic translation initiation factor 5A [Durio zibethinus] | 0 |
| Q9AXJ4 | Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1U8AIB5 | Eukaryotic translation initiation factor 5A OS=Nelumbo nucifera OX=4432 GN=LOC104603299 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology