Basic Information
Locus ID:
nbisL1-mrna-9212
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000193F_pilon | 331062 | 337915 | + | nbisL1-mrna-9212 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 89,275.36 Da | 51.09 | 74.66 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 113 | 416 | 1.18745E-156 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 115 | 415 | 1.1E-53 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 112 | 417 | 4.51E-86 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 110 | 429 | 1.0E-91 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 114 | 418 | 51.404533 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 115 | 130 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 360 | 378 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57990.1 | ubiquitin-specific protease 23. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021683734.1 | ubiquitin carboxyl-terminal hydrolase 23-like isoform X1 [Hevea brasiliensis] | 0 |
| Q9FPS4 | Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana OX=3702 GN=UBP23 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2M9C2 | Ubiquitin carboxyl-terminal hydrolase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg33075 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_15428, gene_8900 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014523 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g164400 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg2724, Sbi_jg35626, Sbi_jg977 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3749 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013587 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl74438, Sgl77993 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006248, gene:ENSEOMG00000035962 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0014080, CQ.Regalona.r1.7BG0015930 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30223730, pistato.v30264940, pistato.v30265910 |
| Apiaceae | Apium graveolens | 2 | Ag2G00422, Ag3G01352 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G005170, COCNU_11G012010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710420, gene-LOC103714240 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1859.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri4G31247, Ftri8G01939 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G57990.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012558m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g19650.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g037260.2N, BniB05g037540.2N, BniB06g045310.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2551 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2691 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g06440 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0152s00016.v1.0, Dusal.0168s00006.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g09510 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.277 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000856 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G04523 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.562, AH07.3773, BH06.617, BH07.3595, CH06.629 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0148890, gene-QOZ80_6AG0511400 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0659030.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_025965, gene-QYE76_028184, gene-QYE76_028185 |
| Poaceae | Oryza coarctata | 4 | Oco03G024190, Oco04G024650, Oco11G003890, Oco12G003920 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g55180.1, LOC_Os06g08530.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G066300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0202861, Pt_Chr0405227, Pt_Chr0405248 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr09G017760, Chr11G021420, Chr13G001950, Chr14G002890 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G633900, Tel7E01G300800 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1BG050110, gene_TRIDC6AG053590 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G357500.1, TraesCS6B02G389500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb374670_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-4991, nbis-gene-8432 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14618, Zma_g29239 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1863, evm.TU.LG11.1234 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g12710 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.124 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13912, nbisL1-mrna-25303 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12338, nbisL1-mrna-21281 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16563, nbisL1-mrna-4931 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.1278, evm.TU.utg000033l.79 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000564, Maker00014799 |
| Rhizophoraceae | Rhizophora apiculata | 5 | nbisL1-mrna-13036, nbisL1-mrna-16693, nbisL1-mrna-16694 ... |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14518, nbisL1-mrna-9212 |
| Salicaceae | Populus euphratica | 2 | populus_peu05592, populus_peu12233 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602971 |
| Solanaceae | Solanum chilense | 1 | SOLCI001360100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025806 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_14399, gene_8154 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3923, TC10G1057 |
| Zosteraceae | Zostera marina | 1 | Zosma05g17830.v3.1 |