Basic Information
Locus ID:
nbisL1-mrna-9195
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000193F_pilon | 133214 | 135822 | + | nbisL1-mrna-9195 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.20 | 37,002.68 Da | 38.67 | 93.86 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 120 | 314 | 2.1E-15 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 32 | 98 | 3.66E-6 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 114 | 335 | 1.44E-23 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 6 | 99 | 6.3E-7 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 113 | 337 | 7.5E-24 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 1 | 99 | 8.921618 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 115 | 337 | 18.284094 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58170.1 | SHV3-like 5. | 0 |
| RefSeq | XP_024458236.2 | - | 0 |
| Q9LVN0 | Glycerophosphodiester phosphodiesterase GDPDL7 OS=Arabidopsis thaliana OX=3702 GN=GDPDL7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2YIM4 | glycerophosphodiester phosphodiesterase OS=Populus deltoides OX=3696 GN=H0E87_012293 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology