Basic Information
Locus ID:
nbisL1-mrna-9193
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000004F_pilon | 3546043 | 3563017 | + | nbisL1-mrna-9193 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 69,945.44 Da | 44.05 | 79.56 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00064 | FU | 69 | 110 | 0.00834542 | IPR006212 |
| Pfam | PF01753 | MYND finger | 72 | 109 | 4.9E-9 | IPR002893 |
| Pfam | PF13423 | Ubiquitin carboxyl-terminal hydrolase | 191 | 310 | 3.1E-6 | IPR028881 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 70 | 114 | 5.93E-12 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 203 | 330 | 9.03E-32 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 57 | 114 | 6.9E-14 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 192 | 312 | 1.3E-29 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 72 | 109 | 12.052056 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 453 | 12.708427 | IPR028889 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 72 | 109 | - | IPR002893 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_021689955.1 | ubiquitin carboxyl-terminal hydrolase 18-like [Hevea brasiliensis] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2LAN2 | USP domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology