Basic Information
Locus ID:
nbisL1-mrna-9187
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000193F_pilon | 79945 | 80368 | - | nbisL1-mrna-9187 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.04 | 12,140.42 Da | 39.64 | 74.78 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 2 | 103 | 3.4E-18 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 2 | 103 | 6.88E-20 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 1 | 107 | 5.4E-28 | - |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 1 | 111 | 22.117737 | IPR001223 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_012074871.1 | class V chitinase [Jatropha curcas] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | A0A067KHH4 | GH18 domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_09020 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology